clearpilot: initial commit of full source

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## Programming
```
./flash.py # flash application
./recover.py # flash bootstub
```
## Debugging
To print out the serial console from the STM32, run `tests/debug_console.py`
Troubleshooting
----
If your panda will not flash and green LED is on, use `recover.py`.
If panda is blinking fast with green LED, use `flash.py`.
Otherwise if LED is off and panda can't be seen with `lsusb` command, use [panda paw](https://comma.ai/shop/products/panda-paw) to go into DFU mode.
If your device has an internal panda and none of the above works, try running `../tests/reflash_internal_panda.py`.